Basic Information
Locus ID:
Zma_g16032
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr08 | 13339960 | 13340706 | + | Zma_g16032 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.34 | 26,862.33 Da | 40.35 | 76.86 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 176 | 215 | 6.88386E-15 | - |
| Pfam | PF17123 | RING-like zinc finger | 176 | 204 | 1.8E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 170 | 218 | 1.06E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 153 | 220 | 2.9E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 177 | 214 | 2.8E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 177 | 214 | 9.715714 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_025827470.1 | E3 ubiquitin-protein ligase RNF181-like [Panicum hallii] | 0 |
| Q91XF4 | E3 ubiquitin-protein ligase RNF167 OS=Mus musculus OX=10090 GN=Rnf167 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3L6RBA5 | RING-type domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM06G14750 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Zoysia japonica | 1 | nbis-gene-46764 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g16032, Zma_g24709 |