Basic Information
Locus ID:
Zma_g15807
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
Chromo (CHRromatin Organisation MOdifier) domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr08 | 8004021 | 8012948 | - | Zma_g15807 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 102,892.76 Da | 42.05 | 76.44 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 451 | 505 | 1.2256E-26 | - |
| Pfam | PF01426 | BAH domain | 196 | 317 | 6.0E-13 | IPR001025 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 452 | 505 | 8.6E-13 | IPR023780 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 514 | 873 | 2.0E-33 | IPR001525 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 440 | 513 | 2.43E-17 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 352 | 876 | 3.14E-79 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 354 | 894 | 7.7E-263 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 668 | 842 | 7.7E-263 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 140 | 305 | 1.1E-53 | IPR043151 |
| SMART | SM00439 | BAH_4 | 195 | 320 | 7.1E-15 | IPR001025 |
| SMART | SM00298 | chromo_7 | 451 | 508 | 3.4E-13 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 352 | 883 | 46.113789 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 452 | 506 | 14.222701 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 195 | 320 | 17.569368 | IPR001025 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 473 | 493 | - | IPR023779 |
| ProSitePatterns | PS00095 | C-5 cytosine-specific DNA methylases C-terminal signature. | 858 | 876 | - | IPR031303 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 520 | 532 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 563 | 577 | 2.3E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 353 | 369 | 2.3E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 609 | 622 | 2.3E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 177 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 110 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 135 | 150 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 161 | 177 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 128 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 41 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_039784885.1 | DNA (cytosine-5)-methyltransferase 3-like isoform X2 [Panicum virgatum] | 0 |
| Q8LPU5 | DNA (cytosine-5)-methyltransferase 3 OS=Zea mays OX=4577 GN=DMT105 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9V7C0 | Chromomethylase 3 OS=Eragrostis curvula OX=38414 GN=EJB05_23142 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology