Basic Information
Locus ID:
Zma_g1524
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr01 | 14284140 | 14289476 | - | Zma_g1524 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.11 | 77,366.55 Da | 40.85 | 93.58 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 296 | 338 | 1.50549E-26 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 418 | 456 | 1.9E-9 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 500 | 538 | 3.0E-9 | IPR000225 |
| Pfam | PF04564 | U-box domain | 292 | 362 | 1.0E-19 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 391 | 663 | 3.6E-50 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 283 | 367 | 9.03E-30 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 371 | 533 | 1.6E-31 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 292 | 365 | 1.4E-30 | IPR013083 |
| Gene3D | G3DSA:1.20.930.20 | - | 41 | 162 | 3.7E-9 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 534 | 669 | 7.7E-19 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 295 | 358 | 3.7E-32 | IPR003613 |
| SMART | SM00185 | arm_5 | 540 | 580 | 20.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 499 | 539 | 0.0012 | IPR000225 |
| SMART | SM00185 | arm_5 | 376 | 415 | 37.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 581 | 621 | 270.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 625 | 665 | 140.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 458 | 498 | 7.4 | IPR000225 |
| SMART | SM00185 | arm_5 | 417 | 457 | 6.1E-6 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 428 | 470 | 12.0924 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 551 | 593 | 8.9774 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 291 | 365 | 44.654861 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 510 | 552 | 9.4324 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 48 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_025793712.1 | protein spotted leaf 11-like [Panicum hallii] | 0 |
| A2ZLU6 | Protein spotted leaf 11 OS=Oryza sativa subsp. indica OX=39946 GN=SPL11 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2T7CEF0 | RING-type E3 ubiquitin transferase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G524000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology