Basic Information
Locus ID:
Zma_g15100
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr08 | 1907641 | 1910341 | + | Zma_g15100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.05 | 41,164.19 Da | 58.16 | 70.82 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 307 | 348 | 1.2E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 298 | 353 | 1.6E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 271 | 354 | 3.0E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 307 | 347 | 2.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 307 | 348 | 12.40076 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G15820.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | NP_001141684.1 | uncharacterized LOC100273811 [Zea mays] | 0 |
| Q9SPL2 | E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana OX=3702 GN=CIP8 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9VBL3 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_24644 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH07.665, CH01.1561 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2AG0104560 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0574800.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_021194 |
| Poaceae | Oryza coarctata | 2 | Oco03G005240, Oco04G004690 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g09820.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G069000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0202201 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr06G033510, Chr15G024830 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC6BG029770 |
| Poaceae | Triticum aestivum | 2 | TraesCS6B02G198800.1, TraesCS6D02G160300.1 |
| Poaceae | Zea mays | 1 | Zm00001eb206330_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-44122 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g15100 |