Basic Information
Locus ID:
Zma_g14780
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr08 | 18378 | 19944 | + | Zma_g14780 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 45,596.36 Da | 54.47 | 89.62 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 178 | 229 | 3.68201E-11 | - |
| Pfam | PF12906 | RING-variant domain | 178 | 228 | 1.2E-8 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 174 | 232 | 1.82E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 163 | 237 | 9.0E-13 | IPR013083 |
| SMART | SM00744 | ringv_2 | 177 | 229 | 2.2E-13 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 170 | 235 | 17.247469 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_025798207.1 | uncharacterized protein LOC112878025 isoform X2 [Panicum hallii] | 0 |
| TrEMBL | A0A5J9VCP3 | RING-CH-type domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_25569 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology