Basic Information
Locus ID:
Zma_g14684
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr07 | 23290977 | 23297941 | - | Zma_g14684 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 86,190.32 Da | 44.96 | 68.40 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 507 | 792 | 1.29436E-65 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 554 | 585 | 2.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 676 | 709 | 9.1E-4 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 35 | 1.8E-7 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 759 | 792 | 0.018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 593 | 629 | 4.1E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 505 | 792 | 3.66E-60 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 645 | 792 | 7.0E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 498 | 644 | 9.5E-33 | IPR015943 |
| SMART | SM00320 | WD40_4 | 589 | 629 | 2.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 504 | 543 | 7.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 712 | 751 | 0.68 | IPR001680 |
| SMART | SM00320 | WD40_4 | 546 | 585 | 1.2E-4 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 0.0036 | IPR006594 |
| SMART | SM00320 | WD40_4 | 671 | 709 | 8.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 753 | 792 | 4.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 632 | 668 | 54.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 760 | 792 | 13.516088 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.247652 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 760 | 792 | 12.525585 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 553 | 585 | 12.145943 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 596 | 638 | 12.01227 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 553 | 585 | 10.126507 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 678 | 718 | 9.739832 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 596 | 630 | 9.388329 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 359 | 419 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 359 | 417 | - | - |
| Coils | Coil | Coil | 79 | 99 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_034577810.1 | transcriptional corepressor LEUNIG_HOMOLOG isoform X1 [Setaria viridis] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U6WH78 | LisH domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_1G368600v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology