Basic Information
Locus ID:
Zma_g14600
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
Ankyrin repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr07 | 22761387 | 22764399 | + | Zma_g14600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.95 | 53,343.62 Da | 47.35 | 88.19 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 88 | 207 | 1.1E-14 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 223 | 277 | 1.7E-7 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 20 | 81 | 8.8E-9 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 20 | 277 | 1.45E-52 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 316 | 375 | 3.53E-7 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 14 | 152 | 1.8E-32 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 153 | 285 | 2.0E-26 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 312 | 382 | 2.4E-5 | IPR013083 |
| SMART | SM00248 | ANK_2a | 83 | 112 | 0.0076 | IPR002110 |
| SMART | SM00248 | ANK_2a | 117 | 147 | 2.3 | IPR002110 |
| SMART | SM00184 | ring_2 | 321 | 367 | 0.0011 | IPR001841 |
| SMART | SM00248 | ANK_2a | 50 | 79 | 5.1E-6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 223 | 252 | 5.7E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 180 | 209 | 1.3E-5 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 223 | 254 | 10.258919 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 117 | 138 | 8.629499 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 223 | 255 | 11.46076 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 180 | 207 | 11.956926 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 83 | 115 | 10.36565 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 50 | 81 | 12.7794 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 83 | 114 | 9.277257 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 321 | 368 | 9.759973 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 180 | 207 | 11.99496 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 50 | 82 | 13.89137 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 117 | 138 | 8.613973 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 336 | 345 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 181 | 196 | 8.0E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 239 | 253 | 8.0E-5 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_004954184.1 | probable E3 ubiquitin-protein ligase XBOS32 [Setaria italica] | 0 |
| Q6KAE5 | Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS32 PE=2 SV=2 | 0 | |
| TrEMBL | K3YRW7 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=101769393 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology