Basic Information
Locus ID:
Zma_g13501
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
ARID/BRIGHT DNA binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr07 | 15332969 | 15336467 | + | Zma_g13501 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.20 | 50,114.59 Da | 57.98 | 62.61 | -0.79 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 60 | 145 | 1.44673E-40 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 270 | 334 | 1.41332E-17 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 64 | 145 | 7.7E-19 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 270 | 337 | 1.2E-14 | IPR009071 |
| SUPERFAMILY | SSF47095 | HMG-box | 261 | 341 | 3.93E-20 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 55 | 158 | 1.44E-28 | IPR036431 |
| Gene3D | G3DSA:1.10.150.60 | - | 49 | 167 | 2.7E-28 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 253 | 347 | 7.0E-21 | IPR036910 |
| SMART | SM00501 | bright_3 | 59 | 150 | 3.9E-27 | IPR001606 |
| SMART | SM00398 | hmgende2 | 269 | 338 | 1.7E-17 | IPR009071 |
| SMART | SM01014 | ARID_2 | 55 | 145 | 1.5E-26 | - |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 270 | 337 | 14.833306 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 58 | 149 | 25.569647 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 274 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 406 | 420 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 251 | 265 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 161 | 191 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 426 | 449 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 379 | 449 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_039789598.1 | high mobility group B protein 15-like [Panicum virgatum] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T0X0K7 | High mobility group B protein 15 OS=Panicum virgatum OX=38727 GN=PVAP13_1NG238400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology