Basic Information
Locus ID:
Zma_g13335
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
RING finger and CHY zinc finger domain-containing protein 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr07 | 13737220 | 13746639 | - | Zma_g13335 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.39 | 30,867.68 Da | 58.70 | 52.44 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05495 | CHY zinc finger | 12 | 93 | 1.7E-17 | IPR008913 |
| Pfam | PF13639 | Ring finger domain | 147 | 190 | 5.7E-7 | IPR001841 |
| Pfam | PF14599 | Zinc-ribbon | 195 | 252 | 2.1E-26 | IPR039512 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 6 | 82 | 1.24E-15 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 84 | 141 | 9.42E-19 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 146 | 193 | 2.12E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 140 | 211 | 7.2E-10 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 219 | 259 | 2.8E-19 | - |
| SMART | SM00184 | ring_2 | 148 | 190 | 1.8E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 148 | 191 | 11.781134 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 83 | 147 | 34.623577 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 5 | 81 | 23.392311 | IPR008913 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22920.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_004982968.1 | E3 ubiquitin-protein ligase RZFP34 isoform X1 [Setaria italica] | 0 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 0 | |
| TrEMBL | K4ADV3 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=101765663 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology