Basic Information
Locus ID:
Zma_g12810
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
K-box region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr07 | 5284516 | 5302208 | + | Zma_g12810 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.64 | 25,403.14 Da | 44.36 | 93.54 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 74 | 9.35302E-42 | IPR033896 |
| Pfam | PF01486 | K-box region | 86 | 170 | 2.3E-22 | IPR002487 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 6.1E-27 | IPR002100 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 80 | 1.83E-31 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 14 | 94 | 2.5E-28 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 7.9E-41 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 31.77702 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 87 | 177 | 13.53515 | IPR002487 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 3 | 57 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 2.2E-31 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 2.2E-31 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 2.2E-31 | IPR002100 |
| Coils | Coil | Coil | 87 | 107 | - | - |
| Coils | Coil | Coil | 143 | 177 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11880.1 | AGAMOUS-like 14. AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots. | 0 |
| RefSeq | XP_004983814.1 | MADS-box transcription factor 56 [Setaria italica] | 0 |
| A2Z9Q7 | MADS-box transcription factor 56 OS=Oryza sativa subsp. indica OX=39946 GN=MADS56 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0C4MKI0 | MADS-box protein OS=Zoysia matrella OX=38722 GN=SS8 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology