Basic Information
Locus ID:
Zma_g12516
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr07 | 3024207 | 3024845 | - | Zma_g12516 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.94 | 21,361.55 Da | 53.94 | 86.18 | 0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 136 | 178 | 8.8E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 131 | 184 | 5.65E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 114 | 183 | 2.1E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 136 | 177 | 2.5E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 136 | 178 | 12.961374 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 188 | 212 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 195 | 212 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10160.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039788948.1 | RING-H2 finger protein ATL14-like [Panicum virgatum] | 0 |
| Q9SN27 | E3 ubiquitin-protein ligase ATL59 OS=Arabidopsis thaliana OX=3702 GN=ATL59 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0WW46 | RING-type domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_1NG135338 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH07.1150, CH07.928 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0107810, gene-QOZ80_2BG0161430 |
| Poaceae | Oryza coarctata | 1 | Oco04G007070 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G104300 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr0G013670, Chr0G033250, Chr15G023330 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-50886 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12516 |