Basic Information
Locus ID:
Zma_g12365
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
LysM domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr07 | 1913968 | 1915998 | + | Zma_g12365 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 71,586.64 Da | 35.30 | 87.37 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 195 | 239 | 6.82953E-7 | IPR018392 |
| Pfam | PF01476 | LysM domain | 197 | 240 | 1.4E-6 | IPR018392 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 409 | 648 | 2.8E-34 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 365 | 650 | 2.39E-58 | IPR011009 |
| SUPERFAMILY | SSF54106 | LysM domain | 195 | 240 | 1.07E-5 | IPR036779 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 339 | 444 | 3.2E-12 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 445 | 662 | 7.3E-54 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 190 | 247 | 1.7E-9 | IPR036779 |
| SMART | SM00257 | LysM_2 | 128 | 176 | 0.48 | IPR018392 |
| SMART | SM00257 | LysM_2 | 196 | 240 | 0.002 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 195 | 239 | 11.339665 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 353 | 659 | 30.873615 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 266 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 333 | 353 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 273 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_039788555.1 | protein LYK5-like [Panicum virgatum] | 0 |
| O22808 | Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3L6RXM9 | Protein LYK5-like OS=Panicum miliaceum OX=4540 GN=C2845_PM11G00210 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology