halophFGD

Basic Information

Locus ID: Zma_g12219

Species & Taxonomic ID: Zoysia macrostachya & 121788

Genome Assembly: GCA_049640385.1

Description: F-box protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Zma_chr07	1016116	1017789	+	Zma_g12219

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.37	55,231.44 Da	53.77	91.87	-0.12

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF08387	FBD	396	435	1.0E-7	IPR006566
Pfam	PF00646	F-box domain	31	74	5.4E-5	IPR001810
SUPERFAMILY	SSF52047	RNI-like	185	375	5.49E-14	-
SUPERFAMILY	SSF81383	F-box domain	15	68	3.92E-10	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	22	71	4.1E-6	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	164	441	3.0E-14	IPR032675
SMART	SM00579	9598neu4hmm	398	479	0.0045	IPR006566
MobiDBLite	mobidb-lite	consensus disorder prediction	9	31	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	31	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G26922.4	-
RefSeq	XP_034574781.1	F-box protein At5g03100-like [Setaria viridis]
Swiss-Prot	Q9LJF8	F-box/LRR-repeat protein At3g26922 OS=Arabidopsis thaliana OX=3702 GN=At3g26922 PE=2 SV=2
TrEMBL	A0A5J9VCU5	F-box domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_24413 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg6181
Aizoaceae	Mesembryanthemum crystallinum	1	gene_2053
Amaranthaceae	Atriplex hortensis	1	Ah008888
Arecaceae	Cocos nucifera	2	COCNU_04G007350, COCNU_04G007380
Arecaceae	Phoenix dactylifera	3	gene-LOC103717301, gene-LOC103718683, gene-LOC103719349
Asparagaceae	Asparagus officinalis	8	AsparagusV1_03.2306.V1.1, AsparagusV1_03.939.V1.1 ... AsparagusV1_03.940.V1.1, AsparagusV1_03.941.V1.1, AsparagusV1_06.280.V1.1, AsparagusV1_07.3941.V1.1, AsparagusV1_08.1220.V1.1, AsparagusV1_08.1221.V1.1
Plantaginaceae	Plantago ovata	2	Pov_00019973, Pov_00040073
Poaceae	Echinochloa crus-galli	22	AH06.2738, AH06.2740, AH06.2743, AH06.2746, AH06.2747 ... AH07.435, BH06.2537, BH06.2538, BH06.2539, BH06.2540, BH06.2542, BH06.2544, BH06.2545, BH07.559, CH06.2839, CH06.2840, CH06.2841, CH06.2845, CH06.2847, CH06.2848, CH06.2849, CH07.420
Poaceae	Eleusine coracana subsp. coracana	9	gene-QOZ80_2AG0102240, gene-QOZ80_2BG0155600 ... gene-QOZ80_6AG0548510, gene-QOZ80_6AG0548560, gene-QOZ80_6AG0548580, gene-QOZ80_6AG0548590, gene-QOZ80_6BG0502190, gene-QOZ80_6BG0502240, gene-QOZ80_6BG0502250
Poaceae	Hordeum vulgare	7	HORVU.MOREX.r3.2HG0196820.1, HORVU.MOREX.r3.6HG0564870.1 ... HORVU.MOREX.r3.7HG0731930.1, HORVU.MOREX.r3.7HG0747800.1, HORVU.MOREX.r3.7HG0747810.1, HORVU.MOREX.r3.7HG0747870.1, HORVU.MOREX.r3.7HG0747880.1
Poaceae	Lolium multiflorum	10	gene-QYE76_005122, gene-QYE76_017618, gene-QYE76_020634 ... gene-QYE76_035678, gene-QYE76_035888, gene-QYE76_035891, gene-QYE76_041859, gene-QYE76_041880, gene-QYE76_045670, gene-QYE76_066101
Poaceae	Oryza coarctata	7	Oco02G006440, Oco02G006460, Oco03G002930, Oco04G002880 ... Oco11G015500, Oco12G015830, Oco12G015850
Poaceae	Oryza sativa	4	LOC_Os01g13910.1, LOC_Os02g06520.1, LOC_Os06g47100.1 ... LOC_Os06g47120.1
Poaceae	Paspalum vaginatum	4	gene-BS78_04G044700, gene-BS78_10G235400 ... gene-BS78_10G235500, gene-BS78_10G239600
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0202543, Pt_Chr0202552, Pt_Chr0307263, Pt_Chr0307311 ... Pt_Chr0401185
Poaceae	Sporobolus alterniflorus	9	Chr02G032030, Chr02G032040, Chr05G010020, Chr05G010030 ... Chr05G010040, Chr06G034690, Chr10G020680, Chr15G026010, Chr29G011100
Poaceae	Thinopyrum elongatum	9	Tel1E01G463200, Tel2E01G766500, Tel5E01G370100 ... Tel6E01G283600, Tel7E01G755300, Tel7E01G755700, Tel7E01G755800, Tel7E01G756900, Tel7E01G936700
Poaceae	Triticum dicoccoides	7	gene_TRIDC2AG064410, gene_TRIDC2BG068680 ... gene_TRIDC5AG036170, gene_TRIDC6AG018020, gene_TRIDC6BG023910, gene_TRIDC7AG062200, gene_TRIDC7BG055550
Poaceae	Triticum aestivum	18	TraesCS2A02G451200.1, TraesCS2B02G472500.1 ... TraesCS2D02G450900.1, TraesCS5A02G226300.1, TraesCS5D02G233500.1, TraesCS6A02G133700.1, TraesCS6B02G162000.1, TraesCS6D02G123100.1, TraesCS7A02G448500.1, TraesCS7A02G448700.1, TraesCS7A02G538800.1, TraesCS7B02G348500.1, TraesCS7D02G438000.1, TraesCS7D02G438500.2, TraesCS7D02G525200.1, TraesCS7D02G525300.1, TraesCS7D02G525600.1, TraesCSU02G097700.1
Poaceae	Zea mays	3	Zm00001eb207690_P001, Zm00001eb232670_P001 ... Zm00001eb273550_P001
Poaceae	Zoysia japonica	5	nbis-gene-29923, nbis-gene-33700, nbis-gene-40602 ... nbis-gene-49302, nbis-gene-7975
Poaceae	Zoysia macrostachya	5	Zma_g12219, Zma_g14976, Zma_g15906, Zma_g21105, Zma_g33279
Portulacaceae	Portulaca oleracea	1	evm.TU.LG14.904
Posidoniaceae	Posidonia oceanica	1	gene.Posoc10g00740
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-3578
Tamaricaceae	Tamarix chinensis	2	TC07G2259, TC07G2260