Basic Information
Locus ID:
Zma_g12171
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
DEAD/DEAH box helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr07 | 707052 | 719142 | - | Zma_g12171 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.35 | 136,766.55 Da | 46.97 | 74.94 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 651 | 783 | 9.53964E-71 | - |
| CDD | cd17920 | DEXHc_RecQ | 450 | 650 | 3.45537E-102 | - |
| Pfam | PF16124 | RecQ zinc-binding | 785 | 864 | 6.9E-15 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 464 | 630 | 5.6E-20 | IPR011545 |
| Pfam | PF00570 | HRDC domain | 1020 | 1087 | 1.5E-14 | IPR002121 |
| Pfam | PF09382 | RQC domain | 871 | 988 | 9.1E-21 | IPR018982 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 670 | 773 | 9.2E-17 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 437 | 792 | 8.59E-44 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 649 | 914 | 6.95E-59 | IPR027417 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 872 | 1011 | 3.54E-15 | IPR036390 |
| SUPERFAMILY | SSF47819 | HRDC-like | 1017 | 1095 | 2.18E-15 | IPR010997 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 1008 | 1094 | 2.5E-21 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 651 | 867 | 2.1E-62 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 425 | 650 | 2.0E-93 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 871 | 983 | 3.9E-19 | IPR036388 |
| SMART | SM00956 | RQC_2 | 873 | 985 | 2.3E-19 | IPR018982 |
| SMART | SM00341 | hrdc7 | 1015 | 1097 | 2.1E-10 | IPR002121 |
| SMART | SM00487 | ultradead3 | 458 | 659 | 2.7E-34 | IPR014001 |
| SMART | SM00490 | helicmild6 | 693 | 774 | 8.3E-27 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 454 | 924 | 4.4E-167 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 470 | 643 | 23.159332 | IPR014001 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 1015 | 1097 | 18.28475 | IPR002121 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 657 | 826 | 19.098392 | IPR001650 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 582 | 591 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1090 | 1114 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1090 | 1146 | - | - |
| Coils | Coil | Coil | 320 | 340 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_034597887.1 | ATP-dependent DNA helicase Q-like 4A [Setaria viridis] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A3L6RSJ5 | DNA helicase OS=Panicum miliaceum OX=4540 GN=C2845_PM11G14120 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology