Basic Information
Locus ID:
Zma_g11877
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr06 | 20878470 | 20881583 | - | Zma_g11877 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 48,568.05 Da | 52.96 | 72.25 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 314 | 345 | 0.016 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 267 | 296 | 0.27 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 89 | 423 | 1.83E-31 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 90 | 422 | 6.6E-21 | IPR015943 |
| SMART | SM00320 | WD40_4 | 304 | 345 | 0.005 | IPR001680 |
| SMART | SM00320 | WD40_4 | 81 | 118 | 25.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 385 | 424 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 179 | 214 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 261 | 301 | 0.012 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 74 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 84 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_004971179.1 | autophagy-related protein 18a [Setaria italica] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | K3XHQ6 | WD_REPEATS_REGION domain-containing protein OS=Setaria italica OX=4555 GN=101771649 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology