Basic Information
Locus ID:
Zma_g11546
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr06 | 18609218 | 18611307 | - | Zma_g11546 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.68 | 25,094.52 Da | 41.23 | 67.26 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12906 | RING-variant domain | 118 | 169 | 6.3E-9 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 112 | 171 | 8.47E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 104 | 177 | 7.4E-14 | IPR013083 |
| SMART | SM00744 | ringv_2 | 117 | 170 | 6.2E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 110 | 176 | 16.451315 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 48 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_002458768.1 | uncharacterized protein LOC8060098 isoform X1 [Sorghum bicolor] | 0 |
| TrEMBL | A0A3L6RKF6 | RING-CH-type domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM13G13440 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology