Basic Information
Locus ID:
Zma_g11280
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr06 | 16987776 | 16993553 | + | Zma_g11280 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.91 | 91,082.61 Da | 33.22 | 85.14 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 10 | 296 | 4.88103E-66 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 136 | 172 | 3.3E-10 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 666 | 822 | 2.7E-43 | IPR028021 |
| Pfam | PF00400 | WD domain, G-beta repeat | 94 | 130 | 1.2E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 176 | 214 | 7.9E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 51 | 88 | 1.9E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 10 | 296 | 3.4E-70 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 131 | 1.3E-33 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 132 | 297 | 3.4E-38 | IPR015943 |
| SMART | SM00320 | WD40_4 | 217 | 255 | 2.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 49 | 88 | 1.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 133 | 172 | 1.5E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 6 | 46 | 0.0045 | IPR001680 |
| SMART | SM00320 | WD40_4 | 91 | 130 | 2.0E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 175 | 214 | 3.3E-10 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 182 | 223 | 15.621435 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 98 | 132 | 12.051043 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 13 | 45 | 8.57106 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 140 | 181 | 17.827036 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 13 | 55 | 10.408196 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 56 | 97 | 15.788527 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 98 | 139 | 15.287253 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 140 | 177 | 13.791033 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 182 | 217 | 12.420132 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 56 | 90 | 11.81377 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 201 | 215 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 75 | 89 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 159 | 173 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 159 | 173 | 2.1E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 117 | 131 | 2.1E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 201 | 215 | 2.1E-7 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 2 | 827 | 19.05802 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 615 | 647 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 362 | 415 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 618 | 647 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 386 | 415 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 370 | 385 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61210.3 | - | 0 |
| RefSeq | XP_034593861.1 | katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Setaria viridis] | 0 |
| F4KB17 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 OS=Arabidopsis thaliana OX=3702 GN=KTN80.3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U6UPE1 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Setaria viridis OX=4556 GN=SEVIR_5G344400v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology