Basic Information
Locus ID:
Zma_g11277
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr06 | 16961022 | 16971314 | - | Zma_g11277 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.88 | 138,942.06 Da | 51.68 | 70.91 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 523 | 845 | 3.43769E-86 | - |
| CDD | cd18793 | SF2_C_SNF | 1094 | 1201 | 3.39406E-51 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1092 | 1191 | 7.8E-15 | IPR001650 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 961 | 998 | 1.3E-8 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 540 | 923 | 1.1E-66 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 854 | 1248 | 2.01E-53 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 958 | 1006 | 1.08E-9 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 499 | 845 | 3.34E-46 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 860 | 1249 | 1.6E-62 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 715 | 846 | 1.5E-27 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 616 | 703 | 2.9E-10 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 955 | 1047 | 1.2E-10 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 497 | 588 | 1.3E-10 | IPR038718 |
| SMART | SM00487 | ultradead3 | 519 | 824 | 3.6E-29 | IPR014001 |
| SMART | SM00184 | ring_2 | 961 | 999 | 3.4E-6 | IPR001841 |
| SMART | SM00490 | helicmild6 | 1108 | 1191 | 1.5E-17 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 538 | 807 | 12.797697 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 961 | 1000 | 10.77793 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1068 | 1244 | 14.308211 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 976 | 985 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 694 | 738 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 56 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 361 | 403 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 698 | 712 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_034592714.1 | helicase-like transcription factor CHR28 isoform X3 [Setaria viridis] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9VFR8 | Helicase ATP-binding domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_16749 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology