Basic Information
Locus ID:
Zma_g11243
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr06 | 16713387 | 16731176 | - | Zma_g11243 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 129,131.30 Da | 44.14 | 81.82 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 45 | 169 | 1.36359E-32 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 187 | 515 | 8.5836E-153 | - |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 876 | 1082 | 5.1E-49 | IPR029346 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 614 | 866 | 2.4E-71 | IPR024729 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 189 | 510 | 2.0E-45 | IPR001394 |
| Pfam | PF00917 | MATH domain | 51 | 171 | 6.1E-17 | IPR002083 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 184 | 539 | 1.16E-95 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 42 | 175 | 3.6E-36 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 675 | 792 | 2.3E-40 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 793 | 889 | 3.3E-22 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 186 | 514 | 5.3E-89 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 42 | 185 | 2.1E-46 | IPR008974 |
| SMART | SM00061 | math_3 | 46 | 150 | 6.8E-13 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 189 | 513 | 40.890064 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 44 | 169 | 34.530876 | IPR002083 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 429 | 446 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 190 | 205 | - | IPR018200 |
| Coils | Coil | Coil | 529 | 551 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11910.1 | ubiquitin-specific protease 13. | 0 |
| RefSeq | XP_034597834.1 | ubiquitin carboxyl-terminal hydrolase 12-like [Setaria viridis] | 0 |
| Q84WU2 | Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U6UL84 | ubiquitinyl hydrolase 1 OS=Setaria viridis OX=4556 GN=SEVIR_5G338200v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology