Basic Information
Locus ID:
Zma_g10910
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
mRNA cleavage
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr06 | 14590264 | 14591025 | + | Zma_g10910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 13,139.78 Da | 32.79 | 53.51 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 46 | 76 | 8.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 2 | 34 | 0.0082 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 2 | 88 | 1.28E-17 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 92 | 1.4E-16 | IPR015943 |
| SMART | SM00320 | WD40_4 | 1 | 35 | 9.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 37 | 77 | 8.3E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 45 | 86 | 10.508451 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 3 | 35 | 10.074014 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 45 | 77 | 8.65015 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_042504090.1 | uncharacterized protein LOC122081162 isoform X1 [Macadamia integrifolia] | 0 |
| Q8K4P0 | pre-mRNA 3' end processing protein WDR33 OS=Mus musculus OX=10090 GN=Wdr33 PE=1 SV=1 | 0 | |
| TrEMBL | F5AFU5 | FY (Fragment) OS=Helianthus annuus OX=4232 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.3280.V1.1 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g10910 |