Basic Information
Locus ID:
Zma_g1079
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr01 | 10440554 | 10441753 | - | Zma_g1079 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.64 | 41,164.93 Da | 55.40 | 85.56 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 146 | 190 | 6.64615E-17 | - |
| Pfam | PF13639 | Ring finger domain | 146 | 190 | 2.8E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 145 | 195 | 6.31E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 112 | 196 | 6.0E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 147 | 189 | 3.9E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 147 | 190 | 11.987676 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 252 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 245 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35000.1 | RING/U-box superfamily protein. E3 ligase-like protein induced by chitin oligomers. | 0 |
| RefSeq | XP_052149813.1 | E3 ubiquitin-protein ligase Os03g0188200-like [Oryza glaberrima] | 0 |
| Q8H7N9 | E3 ubiquitin-protein ligase Os03g0188200 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0188200 PE=2 SV=1 | 0 | |
| TrEMBL | Q10KA4 | Putative RING-H2 zinc finger protein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0065F09.2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH01.3418, BH01.3771, CH01.4020 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0250950, gene-QOZ80_3BG0277360 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0385990.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_067506 |
| Poaceae | Oryza coarctata | 2 | Oco05G015100, Oco06G015550 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g27360.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G333100 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr01G024960, Chr04G012760, Chr07G012190 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G353000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG014260, gene_TRIDC4BG035820 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G104900.1, TraesCS4B02G199100.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb019010_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-12026 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g1079 |