Basic Information
Locus ID:
Zma_g1055
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr01 | 10189372 | 10190187 | - | Zma_g1055 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 27,486.85 Da | 50.21 | 76.97 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 89 | 132 | 5.50066E-14 | - |
| Pfam | PF13639 | Ring finger domain | 89 | 132 | 2.7E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 85 | 137 | 2.78E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 58 | 137 | 2.1E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 90 | 131 | 1.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 90 | 132 | 12.607302 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 203 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 271 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 208 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76410.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_034574031.1 | E3 ubiquitin-protein ligase EL5-like [Setaria viridis] | 0 |
| Q8LC69 | RING-H2 finger protein ATL8 OS=Arabidopsis thaliana OX=3702 GN=ATL8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A811MB92 | RING-type domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS2072 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology