Basic Information
Locus ID:
Zma_g10458
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr06 | 10451757 | 10457368 | + | Zma_g10458 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.01 | 88,482.53 Da | 68.88 | 63.65 | -0.96 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 23 | 52 | 4.55798E-4 | IPR001202 |
| CDD | cd18787 | SF2_C_DEAD | 372 | 501 | 6.35806E-60 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 384 | 492 | 8.1E-33 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 177 | 346 | 2.3E-49 | IPR011545 |
| Pfam | PF00397 | WW domain | 22 | 52 | 3.3E-6 | IPR001202 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 225 | 508 | 3.67E-74 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 13 | 53 | 4.28E-8 | IPR036020 |
| Gene3D | G3DSA:3.40.50.300 | - | 364 | 534 | 1.8E-57 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 14 | 62 | 8.0E-6 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 128 | 363 | 5.0E-88 | IPR027417 |
| SMART | SM00456 | ww_5 | 21 | 54 | 7.0E-5 | IPR001202 |
| SMART | SM00487 | ultradead3 | 172 | 375 | 8.8E-62 | IPR014001 |
| SMART | SM00490 | helicmild6 | 412 | 492 | 6.9E-35 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 184 | 358 | 30.03146 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 11.0929 | IPR001202 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 153 | 181 | 11.504468 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 387 | 531 | 25.616428 | IPR001650 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 52 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 304 | 312 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 742 | 765 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 112 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 529 | 607 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 665 | 709 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 527 | 791 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 89 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 608 | 644 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 134 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_021311702.1 | DEAD-box ATP-dependent RNA helicase 40-like isoform X1 [Sorghum bicolor] | 0 |
| Q5JKF2 | DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0549400 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J9VDI3 | DEAD-box ATP-dependent RNA helicase 14 OS=Eragrostis curvula OX=38414 GN=EJB05_15931 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology