Basic Information
Locus ID:
Zma_g10204
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr06 | 5565565 | 5569041 | + | Zma_g10204 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.23 | 46,389.28 Da | 47.07 | 71.44 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 121 | 154 | 1.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 282 | 316 | 0.0039 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 242 | 277 | 0.0029 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 116 | 414 | 5.68E-41 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 177 | 426 | 4.8E-33 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 100 | 172 | 1.4E-9 | IPR015943 |
| SMART | SM00320 | WD40_4 | 115 | 154 | 3.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 240 | 277 | 2.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 280 | 317 | 0.0017 | IPR001680 |
| SMART | SM00320 | WD40_4 | 194 | 231 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 372 | 408 | 45.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 122 | 154 | 11.312864 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 122 | 163 | 14.351543 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 247 | 286 | 12.780889 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 247 | 278 | 10.021053 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 264 | 278 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 264 | 278 | 2.9E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 304 | 318 | 2.9E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 141 | 155 | 2.9E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 108 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 93 | 108 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51980.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_039811404.1 | zinc finger CCCH domain-containing protein 17-like isoform X1 [Panicum virgatum] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J9UCN2 | WD_REPEATS_REGION domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_31085 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology