Basic Information
Locus ID:
Zma_g10203
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr06 | 5546333 | 5549931 | + | Zma_g10203 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.62 | 46,584.46 Da | 42.97 | 74.15 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 242 | 277 | 0.0029 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 282 | 316 | 5.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 122 | 155 | 2.8E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 118 | 412 | 1.83E-38 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 111 | 213 | 5.5E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 218 | 429 | 1.3E-27 | IPR015943 |
| SMART | SM00320 | WD40_4 | 240 | 277 | 2.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 280 | 317 | 1.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 116 | 155 | 1.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 372 | 408 | 14.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 195 | 231 | 79.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 247 | 286 | 12.780889 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 123 | 164 | 13.917108 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 123 | 155 | 10.970139 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 247 | 278 | 10.021053 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 264 | 278 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 264 | 278 | 9.9E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 142 | 156 | 9.9E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 304 | 318 | 9.9E-8 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 108 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_039811404.1 | zinc finger CCCH domain-containing protein 17-like isoform X1 [Panicum virgatum] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J9UCN2 | WD_REPEATS_REGION domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_31085 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology