Basic Information
Locus ID:
Zma_g10185
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
Right handed beta helix region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr06 | 5326607 | 5328169 | + | Zma_g10185 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 51,811.37 Da | 36.60 | 75.16 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 127 | 441 | 7.9E-87 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 94 | 473 | 5.24E-122 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 85 | 470 | 8.8E-117 | IPR012334 |
| SMART | SM00710 | pbh1 | 334 | 355 | 16.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 280 | 301 | 440.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 363 | 384 | 6400.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 303 | 324 | 830.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 253 | 279 | 150.0 | IPR006626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 72 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 72 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G02460.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | NP_001150436.2 | polygalacturonase precursor [Zea mays] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0A9EY08 | Polygalacturonase OS=Arundo donax OX=35708 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology