Basic Information
Locus ID:
Zma_g1003
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
Nuclear transport factor 2 (NTF2) domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr01 | 9290922 | 9294794 | - | Zma_g1003 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.98 | 73,975.22 Da | 44.50 | 56.57 | -0.96 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00780 | NTF2 | 18 | 136 | 2.02313E-42 | IPR018222 |
| CDD | cd00590 | RRM_SF | 317 | 375 | 1.1987E-8 | - |
| Pfam | PF02136 | Nuclear transport factor 2 (NTF2) domain | 19 | 135 | 6.6E-31 | IPR002075 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 317 | 375 | 2.8E-7 | IPR000504 |
| SUPERFAMILY | SSF54427 | NTF2-like | 15 | 136 | 3.12E-36 | IPR032710 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 304 | 398 | 2.44E-13 | IPR035979 |
| Gene3D | G3DSA:3.10.450.50 | - | 9 | 138 | 1.0E-35 | - |
| Gene3D | G3DSA:3.30.70.330 | - | 303 | 399 | 4.9E-10 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 316 | 388 | 5.6E-7 | IPR000504 |
| ProSiteProfiles | PS50177 | Nuclear transport factor 2 domain profile. | 18 | 135 | 32.450275 | IPR018222 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 315 | 392 | 9.456252 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 289 | 304 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 472 | 487 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 589 | 613 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 644 | 668 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 258 | 305 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 488 | 502 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 258 | 274 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 506 | 550 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 457 | 630 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60980.2 | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain. | 0 |
| RefSeq | XP_004984008.1 | ras GTPase-activating protein-binding protein 1 [Setaria italica] | 0 |
| Q9FME2 | Nuclear transport factor 2 OS=Arabidopsis thaliana OX=3702 GN=NTF2 PE=1 SV=1 | 0 | |
| TrEMBL | K4A7B8 | G3BP-like protein OS=Setaria italica OX=4555 GN=101752694 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology