Basic Information
Locus ID:
Thhalv10029513m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
cellular macromolecule catabolic process
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_3 | 1459982 | 1461214 | + | Thhalv10029513m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 46,787.31 Da | 67.14 | 82.66 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 343 | 404 | 0.00162712 | - |
| Pfam | PF00240 | Ubiquitin family | 3 | 68 | 1.7E-13 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 344 | 405 | 2.99E-6 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 75 | 1.11E-16 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 70 | 5.5E-17 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 339 | 403 | 3.7E-5 | - |
| SMART | SM00213 | ubq_7 | 1 | 73 | 2.7E-7 | IPR000626 |
| SMART | SM00213 | ubq_7 | 331 | 406 | 11.0 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 71 | 14.948022 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 328 | 403 | 10.179209 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 274 | 293 | - | - |
| Coils | Coil | Coil | 348 | 368 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05230.1 | Ubiquitin-like superfamily protein. | 0 |
| RefSeq | XP_006396522.2 | ubiquitin domain-containing protein 7SL RNA2 [Eutrema salsugineum] | 0 |
| Q9ZT95 | Ubiquitin domain-containing protein 7SL RNA1 OS=Arabidopsis thaliana OX=3702 GN=7SL1 PE=3 SV=2 | 0 | |
| TrEMBL | V4MZC6 | Ubiquitin-like domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10029513mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10029513m.g.v1.0 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.2349, BH03.2480, CH03.2673 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0539190, gene-QOZ80_6BG0492510 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0489850.1.CDS1 |
| Poaceae | Oryza coarctata | 1 | Oco17G007580 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g30390.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G220400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0701629 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr0G015850, Chr14G016030, Chr21G015060 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G412500 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5AG040400 |
| Poaceae | Triticum aestivum | 2 | TraesCS5A02G258000.1.cds1, TraesCS5B02G257200.1.cds1 |
| Poaceae | Zea mays | 1 | Zm00001eb101690_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-10485 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g30519 |