Basic Information
Locus ID:
Thhalv10029470m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
F-box Kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_3 | 11102740 | 11105034 | - | Thhalv10029470m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.75 | 34,818.58 Da | 52.76 | 101.52 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 21 | 65 | 9.6E-8 | IPR001810 |
| SUPERFAMILY | SSF117281 | Kelch motif | 71 | 287 | 5.75E-14 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 14 | 94 | 3.92E-8 | IPR036047 |
| Gene3D | G3DSA:2.120.10.80 | - | 46 | 271 | 1.3E-5 | IPR015915 |
| SMART | SM00256 | fbox_2 | 24 | 64 | 3.7E-6 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 18 | 64 | 9.868391 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38940.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_018473779.1 | PREDICTED: F-box/kelch-repeat protein At4g38940-like [Raphanus sativus] | 0 |
| Q9SVJ9 | F-box/kelch-repeat protein At4g38940 OS=Arabidopsis thaliana OX=3702 GN=At4g38940 PE=1 SV=1 | 0 | |
| TrEMBL | V4N0X7 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10029470mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Eutrema salsugineum | 31 | Thhalv10002293m.g.v1.0, Thhalv10015844m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g12680.v2.2, Sp5g22490.v2.2 |
| Brassicaceae | Brassica nigra | 12 | BniB01g013190.2N, BniB01g013200.2N, BniB01g013210.2N ... |