Basic Information
Locus ID:
Thhalv10029461m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_3 | 1003385 | 1006322 | - | Thhalv10029461m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 79,667.18 Da | 40.91 | 81.19 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00028 | B_lectin | 4 | 107 | 1.59877E-19 | IPR001480 |
| CDD | cd01098 | PAN_AP_plant | 295 | 370 | 3.18639E-14 | - |
| Pfam | PF01453 | D-mannose binding lectin | 41 | 133 | 1.5E-16 | IPR001480 |
| Pfam | PF00954 | S-locus glycoprotein domain | 203 | 276 | 3.6E-8 | IPR000858 |
| Pfam | PF08276 | PAN-like domain | 292 | 354 | 3.0E-12 | IPR003609 |
| Pfam | PF00069 | Protein kinase domain | 408 | 594 | 5.6E-39 | IPR000719 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 42 | 138 | 1.1E-16 | IPR036426 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 389 | 673 | 5.19E-64 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 477 | 659 | 2.7E-45 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 366 | 476 | 4.1E-29 | - |
| Gene3D | G3DSA:2.90.10.10 | - | 1 | 112 | 9.8E-10 | IPR036426 |
| SMART | SM00220 | serkin_6 | 403 | 654 | 1.6E-12 | IPR000719 |
| SMART | SM00108 | blect_4 | 1 | 111 | 8.5E-16 | IPR001480 |
| SMART | SM00473 | ntp_6 | 291 | 369 | 7.9E-8 | IPR003609 |
| PIRSF | PIRSF000641 | SRK | 593 | 707 | 8.8E-17 | IPR024171 |
| PIRSF | PIRSF000641 | SRK | 1 | 383 | 9.9E-65 | IPR024171 |
| PIRSF | PIRSF000641 | SRK | 377 | 595 | 1.7E-96 | IPR024171 |
| ProSiteProfiles | PS50948 | PAN/Apple domain profile. | 291 | 370 | 9.974125 | IPR003609 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 403 | 693 | 32.781708 | IPR000719 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 1 | 116 | 14.998173 | IPR001480 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 522 | 534 | - | IPR008271 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21380.1 | receptor kinase 3. encodes a putative receptor-like serine/threonine protein kinases that is similar to Brassica self-incompatibility (S) locus. Expressed in root. Shoot expression limited to limited to the root-hypocotyl transition zone and at the base of lateral roots as well as in axillary buds, and pedicels. | 0 |
| RefSeq | XP_024009917.1 | S-locus-specific glycoprotein S13-like [Eutrema salsugineum] | 0 |
| O81905 | Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana OX=3702 GN=SD18 PE=1 SV=1 | 0 | |
| TrEMBL | V4L2I0 | Non-specific serine/threonine protein kinase (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10029461mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for Thhalv10029461m.g.v1.0.