Basic Information
Locus ID:
Thhalv10029460m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
protein serine/threonine kinase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_3 | 3618249 | 3619700 | - | Thhalv10029460m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 35,837.78 Da | 50.85 | 91.10 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 64 | 293 | 6.5E-38 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 20 | 294 | 4.72E-61 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 101 | 300 | 1.2E-48 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 8 | 100 | 2.8E-17 | - |
| SMART | SM00220 | serkin_6 | 37 | 295 | 7.5E-16 | IPR000719 |
| ProSiteProfiles | PS50890 | PUA domain profile. | 239 | 255 | 8.523908 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 37 | 296 | 30.407194 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 146 | 158 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11890.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_024010085.1 | LOW QUALITY PROTEIN: cysteine-rich receptor-like protein kinase 45 [Eutrema salsugineum] | 0 |
| Q8GY82 | Cysteine-rich receptor-like protein kinase 45 OS=Arabidopsis thaliana OX=3702 GN=CRK45 PE=1 SV=1 | 0 | |
| TrEMBL | V4L7G9 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10029460mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G11890.3 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10029460m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g05590.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g036970.2N |