Basic Information
Locus ID:
Thhalv10029429m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
BEST Arabidopsis thaliana protein match is F-box and associated interaction domains-containing protein (TAIR
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_3 | 7548596 | 7549364 | + | Thhalv10029429m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.65 | 26,146.22 Da | 63.88 | 98.27 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 34 | 68 | 3.7E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 34 | 81 | 6.54E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 21 | 70 | 2.6E-5 | - |
| SMART | SM00256 | fbox_2 | 35 | 74 | 1.9E-5 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 120 | 231 | 5.1E-22 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 29 | 74 | 8.543671 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G62660.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_006394363.2 | putative F-box protein At5g62660 [Eutrema salsugineum] | 0 |
| Q9LV12 | Putative F-box protein At5g62660 OS=Arabidopsis thaliana OX=3702 GN=At5g62660 PE=4 SV=1 | 0 | |
| TrEMBL | V4LFP3 | F-box domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10029429mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 11 | AT2G16810.1, AT2G40910.1, AT2G40920.1, AT2G40925.1 ... |
| Brassicaceae | Eutrema salsugineum | 16 | Thhalv10004411m.g.v1.0, Thhalv10005275m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g05850.v2.2, Sp1g09440.v2.2, Sp4g23370.v2.2 |
| Brassicaceae | Brassica nigra | 35 | BniB01g038340.2N, BniB02g054720.2N, BniB02g059130.2N ... |