Basic Information
Locus ID:
Thhalv10029424m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
protein polyubiquitination
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_3 | 3322556 | 3322909 | + | Thhalv10029424m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.27 | 13,198.95 Da | 46.56 | 84.19 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 64 | 111 | 2.3E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 54 | 115 | 5.81E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 25 | 115 | 5.0E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 65 | 110 | 1.9E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 65 | 111 | 12.666314 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05350.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006396788.2 | uncharacterized protein LOC18014408 [Eutrema salsugineum] | 0 |
| Q20798 | E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis elegans OX=6239 GN=sel-11 PE=1 SV=1 | 0 | |
| TrEMBL | V4MZX2 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10029424mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 6 | AT4G05350.1, AT4G12140.1, AT4G12150.1, AT4G12190.1 ... |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10029142m.g.v1.0, Thhalv10029147m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g06770.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB05g058300.2N, BniB08g037110.2N, BniB08g051300.2N ... |