Basic Information
Locus ID:
Thhalv10029356m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_3 | 3563835 | 3565004 | - | Thhalv10029356m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.64 | 43,917.69 Da | 42.94 | 80.36 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01344 | Kelch motif | 180 | 216 | 5.0E-11 | IPR006652 |
| Pfam | PF00646 | F-box domain | 31 | 77 | 2.4E-8 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 133 | 171 | 1.7E-10 | IPR006652 |
| SUPERFAMILY | SSF81383 | F-box domain | 24 | 104 | 9.55E-9 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 82 | 370 | 3.92E-41 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 73 | 275 | 6.8E-25 | IPR015915 |
| SMART | SM00612 | kelc_smart | 186 | 234 | 0.46 | IPR006652 |
| SMART | SM00612 | kelc_smart | 140 | 184 | 6.1E-6 | IPR006652 |
| SMART | SM00256 | fbox_2 | 35 | 75 | 1.0E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 29 | 75 | 10.371784 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61540.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_006396819.1 | putative F-box/kelch-repeat protein At1g61540 [Eutrema salsugineum] | 0 |
| Q9SY96 | Putative F-box/kelch-repeat protein At1g61540 OS=Arabidopsis thaliana OX=3702 GN=At1g61540 PE=4 SV=1 | 0 | |
| TrEMBL | V4L7F5 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10029356mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G61540.1, AT4G39590.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10027031m.g.v1.0, Thhalv10029197m.g.v1.0 ... |
| Brassicaceae | Brassica nigra | 3 | BniB05g000430.2N, BniB05g000440.2N, BniB05g000450.2N |