halophFGD

Basic Information

Locus ID: Thhalv10029324m.g.v1.0

Species & Taxonomic ID: Eutrema salsugineum & 72664

Genome Assembly: GCF_000478725.1

Description: protein modification by small protein conjugation

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold_3	4853209	4853984	-	Thhalv10029324m.g.v1.0

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.11	13,166.85 Da	32.97	85.90	-0.12

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00179	Ubiquitin-conjugating enzyme	10	68	3.6E-17	IPR000608
SUPERFAMILY	SSF54495	UBC-like	4	114	3.02E-24	IPR016135
Gene3D	G3DSA:3.10.110.10	Ubiquitin Conjugating Enzyme	2	112	1.6E-21	IPR016135
SMART	SM00212	ubc_7	5	115	9.9E-6	-
ProSiteProfiles	PS50127	Ubiquitin-conjugating (UBC) core domain profile.	2	117	20.465668	IPR000608

KEGG Pathway

KO Term:

K06689 (ubiquitin-conjugating enzyme E2 D [EC:2.3.2.23])

Pathway:

ko04013 (MAPK signaling pathway - fly) map04013 (MAPK signaling pathway - fly) ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis) ko04141 (Protein processing in endoplasmic reticulum) map04141 (Protein processing in endoplasmic reticulum) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G16740.1	ubiquitin-conjugating enzyme 29.
RefSeq	XP_006396939.1	ubiquitin-conjugating enzyme E2 4 [Eutrema salsugineum]
Swiss-Prot	P15731	Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UBC4 PE=1 SV=1
TrEMBL	V4L7S4	UBC core domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10029324mg PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Eutrema salsugineum	40	Thhalv10000486m.g.v1.0, Thhalv10000596m.g.v1.0 ... Thhalv10000614m.g.v1.0, Thhalv10000665m.g.v1.0, Thhalv10001869m.g.v1.0, Thhalv10002156m.g.v1.0, Thhalv10002228m.g.v1.0, Thhalv10002871m.g.v1.0, Thhalv10002909m.g.v1.0, Thhalv10002914m.g.v1.0, Thhalv10003007m.g.v1.0, Thhalv10003047m.g.v1.0, Thhalv10003377m.g.v1.0, Thhalv10003398m.g.v1.0, Thhalv10003410m.g.v1.0, Thhalv10005415m.g.v1.0, Thhalv10005459m.g.v1.0, Thhalv10010994m.g.v1.0, Thhalv10011972m.g.v1.0, Thhalv10012188m.g.v1.0, Thhalv10012195m.g.v1.0, Thhalv10015327m.g.v1.0, Thhalv10015453m.g.v1.0, Thhalv10015713m.g.v1.0, Thhalv10016072m.g.v1.0, Thhalv10017582m.g.v1.0, Thhalv10017952m.g.v1.0, Thhalv10019508m.g.v1.0, Thhalv10022481m.g.v1.0, Thhalv10023800m.g.v1.0, Thhalv10023857m.g.v1.0, Thhalv10026772m.g.v1.0, Thhalv10026805m.g.v1.0, Thhalv10026912m.g.v1.0, Thhalv10028035m.g.v1.0, Thhalv10028306m.g.v1.0, Thhalv10029250m.g.v1.0, Thhalv10029290m.g.v1.0, Thhalv10029324m.g.v1.0, Thhalv10029500m.g.v1.0