Basic Information
Locus ID:
Thhalv10029305m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
cellular macromolecule catabolic process
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_3 | 1457936 | 1459168 | + | Thhalv10029305m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.91 | 46,916.28 Da | 57.82 | 67.17 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 3 | 72 | 6.7E-11 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 76 | 4.05E-14 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 327 | 390 | 2.12E-6 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 70 | 1.5E-16 | - |
| SMART | SM00213 | ubq_7 | 309 | 392 | 20.0 | IPR000626 |
| SMART | SM00213 | ubq_7 | 1 | 73 | 1.6E-5 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 72 | 13.445519 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 311 | 389 | 9.003338 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 178 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 201 | 220 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 140 | 178 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 254 | 288 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 288 | - | - |
| Coils | Coil | Coil | 269 | 289 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03370.1 | Ubiquitin family protein. | 0 |
| RefSeq | XP_006396522.2 | ubiquitin domain-containing protein 7SL RNA2 [Eutrema salsugineum] | 0 |
| Q9FHQ6 | Polyubiquitin 9 OS=Arabidopsis thaliana OX=3702 GN=UBQ9 PE=3 SV=1 | 0 | |
| TrEMBL | V4KJF4 | Ubiquitin-like domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10029305mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10029305m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g03000.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB08g039200.2N, BniB08g039210.2N, BniB08g045630.2N |