Basic Information
Locus ID:
Thhalv10029273m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Glycosyl hydrolases family 28
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_3 | 829982 | 832098 | + | Thhalv10029273m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.23 | 37,729.57 Da | 54.95 | 72.52 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 72 | 272 | 2.7E-43 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 33 | 273 | 1.57E-71 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 23 | 300 | 5.2E-68 | IPR012334 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G01890.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_024009913.1 | polygalacturonase At1g48100, partial [Eutrema salsugineum] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | V4LDH1 | Polygalacturonase (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10029273mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology