Basic Information
Locus ID:
Thhalv10029197m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_3 | 2265558 | 2266730 | + | Thhalv10029197m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.49 | 44,077.69 Da | 40.16 | 80.15 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01344 | Kelch motif | 135 | 174 | 6.6E-9 | IPR006652 |
| Pfam | PF01344 | Kelch motif | 177 | 219 | 1.4E-13 | IPR006652 |
| Pfam | PF00646 | F-box domain | 33 | 79 | 4.0E-8 | IPR001810 |
| SUPERFAMILY | SSF117281 | Kelch motif | 84 | 370 | 1.57E-43 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 26 | 114 | 8.37E-10 | IPR036047 |
| Gene3D | G3DSA:2.120.10.80 | - | 93 | 307 | 7.0E-27 | IPR015915 |
| SMART | SM00612 | kelc_smart | 143 | 187 | 1.6E-7 | IPR006652 |
| SMART | SM00612 | kelc_smart | 188 | 237 | 0.86 | IPR006652 |
| SMART | SM00256 | fbox_2 | 37 | 77 | 2.7E-5 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 31 | 77 | 10.318796 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G39590.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_006396668.1 | F-box/kelch-repeat protein At4g39590 [Eutrema salsugineum] | 0 |
| Q1PE10 | F-box/kelch-repeat protein At4g39590 OS=Arabidopsis thaliana OX=3702 GN=At4g39590 PE=2 SV=1 | 0 | |
| TrEMBL | V4MZP7 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10029197mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G61540.1, AT4G39590.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10027031m.g.v1.0, Thhalv10029197m.g.v1.0 ... |
| Brassicaceae | Brassica nigra | 3 | BniB05g000430.2N, BniB05g000440.2N, BniB05g000450.2N |