Basic Information
Locus ID:
Thhalv10029195m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_3 | 6438776 | 6439426 | + | Thhalv10029195m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.29 | 24,637.15 Da | 52.28 | 99.17 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 165 | 210 | 3.5E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 156 | 213 | 1.64E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 129 | 214 | 1.5E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 166 | 209 | 1.6E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 166 | 210 | 12.666314 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37270.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_002870502.1 | uncharacterized protein LOC9304568 [Arabidopsis lyrata subsp. lyrata] | 0 |
| Q9M313 | RING-H2 finger protein ATL68 OS=Arabidopsis thaliana OX=3702 GN=ATL68 PE=2 SV=1 | 0 | |
| TrEMBL | V4LFG4 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10028356mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 6 | AT5G37200.1, AT5G37220.1, AT5G37230.1, AT5G37250.1 ... |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10028290m.g.v1.0, Thhalv10028317m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 5 | Sp3g29000.v2.2, Sp6g06800.v2.2, Sp6g10420.v2.2 ... |
| Brassicaceae | Brassica nigra | 3 | BniB01g030310.2N, BniB01g030320.2N, BniB03g062660.2N |