halophFGD

Basic Information

Locus ID: Thhalv10029170m.g.v1.0

Species & Taxonomic ID: Eutrema salsugineum & 72664

Genome Assembly: GCF_000478725.1

Description: protein ubiquitination

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold_3	6721509	6722066	+	Thhalv10029170m.g.v1.0

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.31	22,008.49 Da	29.97	77.84	-0.51

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF117281	Kelch motif	2	167	6.41E-13	IPR015915

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G38940.1	Galactose oxidase/kelch repeat superfamily protein.
RefSeq	XP_006397052.1	F-box/kelch-repeat protein At4g38940 [Eutrema salsugineum]
Swiss-Prot	Q9SVJ9	F-box/kelch-repeat protein At4g38940 OS=Arabidopsis thaliana OX=3702 GN=At4g38940 PE=1 SV=1
TrEMBL	V4KKW0	DUF295 domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10029170mg PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Eutrema salsugineum	31	Thhalv10002293m.g.v1.0, Thhalv10015844m.g.v1.0 ... Thhalv10016904m.g.v1.0, Thhalv10016945m.g.v1.0, Thhalv10017512m.g.v1.0, Thhalv10017515m.g.v1.0, Thhalv10017533m.g.v1.0, Thhalv10017591m.g.v1.0, Thhalv10017616m.g.v1.0, Thhalv10017621m.g.v1.0, Thhalv10017648m.g.v1.0, Thhalv10017704m.g.v1.0, Thhalv10017708m.g.v1.0, Thhalv10017748m.g.v1.0, Thhalv10017764m.g.v1.0, Thhalv10017773m.g.v1.0, Thhalv10017778m.g.v1.0, Thhalv10017832m.g.v1.0, Thhalv10017911m.g.v1.0, Thhalv10017955m.g.v1.0, Thhalv10027506m.g.v1.0, Thhalv10029145m.g.v1.0, Thhalv10029154m.g.v1.0, Thhalv10029170m.g.v1.0, Thhalv10029266m.g.v1.0, Thhalv10029317m.g.v1.0, Thhalv10029396m.g.v1.0, Thhalv10029437m.g.v1.0, Thhalv10029470m.g.v1.0, Thhalv10029517m.g.v1.0, Thhalv10029520m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp4g12680.v2.2, Sp5g22490.v2.2
Brassicaceae	Brassica nigra	12	BniB01g013190.2N, BniB01g013200.2N, BniB01g013210.2N ... BniB05g064040.2N, BniB05g064060.2N, BniB05g064070.2N, BniB06g019990.2N, BniB06g020020.2N, BniB08g016880.2N, BniB08g018650.2N, BniB08g018660.2N, BniB08g018680.2N