Basic Information
Locus ID:
Thhalv10029142m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
protein polyubiquitination
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_3 | 3335946 | 3336305 | + | Thhalv10029142m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.40 | 13,497.53 Da | 51.08 | 93.36 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 63 | 108 | 2.2E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 51 | 113 | 1.62E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 21 | 114 | 2.5E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 63 | 108 | 6.8E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 63 | 109 | 12.282736 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12210.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006396790.1 | putative RING-H2 finger protein ATL37 [Eutrema salsugineum] | 0 |
| Q5UQ40 | Probable bifunctional E2/E3 enzyme R795 OS=Acanthamoeba polyphaga mimivirus OX=212035 GN=MIMI_R795 PE=3 SV=1 | 0 | |
| TrEMBL | V4LEP2 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10029142mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 6 | AT4G05350.1, AT4G12140.1, AT4G12150.1, AT4G12190.1 ... |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10029142m.g.v1.0, Thhalv10029147m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g06770.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB05g058300.2N, BniB08g037110.2N, BniB08g051300.2N ... |