Basic Information
Locus ID:
Thhalv10028947m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
heterochromatin assembly
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_3 | 2519219 | 2521561 | - | Thhalv10028947m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.23 | 25,545.62 Da | 55.55 | 53.73 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04714 | BAH_BAHCC1 | 31 | 165 | 4.26683E-56 | - |
| Pfam | PF00628 | PHD-finger | 149 | 197 | 5.7E-10 | IPR019787 |
| Pfam | PF01426 | BAH domain | 32 | 144 | 2.6E-23 | IPR001025 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 141 | 198 | 1.26E-18 | IPR011011 |
| Gene3D | G3DSA:2.30.30.490 | - | 2 | 141 | 3.1E-30 | IPR043151 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 142 | 211 | 2.6E-20 | IPR013083 |
| SMART | SM00249 | PHD_3 | 149 | 196 | 3.8E-10 | IPR001965 |
| SMART | SM00439 | BAH_4 | 30 | 145 | 1.6E-40 | IPR001025 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 147 | 198 | 9.1073 | IPR019787 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 30 | 145 | 22.983568 | IPR001025 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 150 | 195 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22140.2 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. | 0 |
| RefSeq | XP_006396706.1 | chromatin remodeling protein EBS [Eutrema salsugineum] | 0 |
| F4JL28 | Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=1 | 0 | |
| TrEMBL | V4L3E3 | Chromatin remodeling protein EBS OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10028947mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology