Basic Information
Locus ID:
Thhalv10028914m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_3 | 1778214 | 1780068 | - | Thhalv10028914m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 27,723.30 Da | 42.65 | 68.45 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 46 | 98 | 9.78038E-26 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 48 | 77 | 3.1E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 43 | 109 | 1.08E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 34 | 110 | 1.3E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 48 | 96 | 2.9E-10 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 48 | 97 | 13.13841 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 63 | 72 | - | IPR017907 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03510.1 | RING membrane-anchor 1. RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory pathway. Has E3 ubiquitin ligase activity. | 0 |
| RefSeq | XP_006396578.1 | E3 ubiquitin-protein ligase RMA1 [Eutrema salsugineum] | 0 |
| O64425 | E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV=1 | 0 | |
| TrEMBL | V4MZI4 | RING-type E3 ubiquitin transferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10028914mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology