Basic Information
Locus ID:
Thhalv10028712m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Leucine-rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_3 | 1475064 | 1476319 | + | Thhalv10028712m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.67 | 43,362.42 Da | 37.44 | 106.15 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 122 | 181 | 1.7E-7 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 214 | 228 | 1.4 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 28 | 66 | 4.9E-9 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 35 | 367 | 1.16E-44 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 192 | 373 | 1.1E-28 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 28 | 191 | 1.6E-38 | IPR032675 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 146 | 168 | 7.33462 | IPR001611 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 147 | 160 | 5.5E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 237 | 250 | 5.5E-5 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03010.1 | RNI-like superfamily protein. | 0 |
| RefSeq | XP_006396528.1 | LRR receptor-like serine/threonine-protein kinase ERL1 [Eutrema salsugineum] | 0 |
| TrEMBL | V4MZE4 | LRRNT_2 domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10028712mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology