Basic Information
Locus ID:
Thhalv10028650m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Cell division cycle 20.2, cofactor of APC complex-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_3 | 4581346 | 4583522 | + | Thhalv10028650m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.45 | 50,286.76 Da | 41.11 | 75.39 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 156 | 426 | 8.72179E-43 | - |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 173 | 231 | 6.8E-7 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 255 | 290 | 2.7E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 391 | 426 | 0.0014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 303 | 341 | 3.4E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 150 | 429 | 2.7E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 81 | 429 | 8.8E-126 | IPR015943 |
| SMART | SM00320 | WD40_4 | 299 | 341 | 4.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 167 | 206 | 9.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 387 | 426 | 5.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 251 | 290 | 1.3E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 209 | 246 | 0.86 | IPR001680 |
| SMART | SM00320 | WD40_4 | 344 | 384 | 220.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 258 | 299 | 14.318126 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 174 | 215 | 11.778342 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 258 | 290 | 11.787407 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 394 | 427 | 12.580379 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 394 | 427 | 10.469233 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 174 | 206 | 8.755605 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 413 | 427 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_006396914.1 | cell division cycle 20.1, cofactor of APC complex [Eutrema salsugineum] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | V4L7Q0 | ANAPC4_WD40 domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10028650mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology