Basic Information
Locus ID:
Thhalv10028629m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
FIZZY-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_3 | 3608784 | 3612082 | + | Thhalv10028629m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.98 | 52,295.95 Da | 49.16 | 73.04 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 283 | 319 | 9.2E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 325 | 364 | 0.02 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 413 | 449 | 1.3E-5 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 207 | 260 | 1.9E-4 | IPR024977 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 168 | 457 | 2.56E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 145 | 454 | 4.6E-123 | IPR015943 |
| SMART | SM00320 | WD40_4 | 322 | 364 | 3.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 280 | 319 | 5.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 239 | 276 | 0.038 | IPR001680 |
| SMART | SM00320 | WD40_4 | 367 | 407 | 160.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 196 | 236 | 0.16 | IPR001680 |
| SMART | SM00320 | WD40_4 | 410 | 449 | 3.2E-8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 287 | 319 | 10.917412 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 417 | 450 | 14.084198 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 287 | 328 | 13.516088 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 204 | 245 | 8.570195 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 417 | 450 | 11.65559 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 436 | 450 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 146 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 28 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11920.1 | cell cycle switch protein 52 A2. Encodes a putative activator of the anaphase-promoting complex/cyclosome. Promotes exit from the cell cycle and entry into the endocycle leading to endoreduplication. | 0 |
| RefSeq | XP_006396831.2 | protein FIZZY-RELATED 1 [Eutrema salsugineum] | 0 |
| Q8VZS9 | Protein FIZZY-RELATED 1 OS=Arabidopsis thaliana OX=3702 GN=FZR1 PE=1 SV=1 | 0 | |
| TrEMBL | V4L3Q4 | ANAPC4_WD40 domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10028629mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology