Basic Information
Locus ID:
Thhalv10028532m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
grr1-like protein 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_3 | 1625037 | 1627353 | - | Thhalv10028532m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 65,572.54 Da | 46.64 | 99.33 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 62 | 108 | 7.1E-24 | IPR041101 |
| Pfam | PF18511 | F-box | 5 | 43 | 3.8E-17 | IPR041567 |
| SUPERFAMILY | SSF52047 | RNI-like | 24 | 530 | 2.35E-37 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 42 | 571 | 2.2E-177 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 41 | 2.9E-16 | - |
| SMART | SM00367 | LRR_CC_2 | 284 | 308 | 590.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 100 | 124 | 170.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 125 | 150 | 510.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 427 | 450 | 38.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 206 | 229 | 330.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 476 | 500 | 37.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 5 | 46 | 7.1E-5 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 151 | 185 | 83.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 309 | 332 | 550.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 367 | 391 | 1.1 | IPR006553 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 48 | 8.543671 | IPR001810 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03190.1 | GRR1-like protein 1. Encodes an F box protein belonging to the TIR1 subfamily. This protein forms SCF complexes with ASK1 and CUL1 and interacts with Aux/IAA proteins in an auxin-dependent manner. It also has sequence similarity to the yeast protein GRR1, which is involved in glucose repression. | 0 |
| RefSeq | XP_006396547.1 | GRR1-like protein 1 [Eutrema salsugineum] | 0 |
| Q9ZR12 | GRR1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=GRH1 PE=1 SV=1 | 0 | |
| TrEMBL | E4MVG8 | mRNA, clone: RTFL01-02-K12 OS=Eutrema halophilum OX=98038 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology