Basic Information
Locus ID:
Thhalv10028504m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Cysteine-rich receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_3 | 2446956 | 2449420 | - | Thhalv10028504m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.11 | 73,638.09 Da | 54.24 | 80.75 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 353 | 610 | 5.8157E-99 | - |
| Pfam | PF01657 | Salt stress response/antifungal | 34 | 129 | 1.7E-10 | IPR002902 |
| Pfam | PF00069 | Protein kinase domain | 348 | 609 | 1.7E-49 | IPR000719 |
| Pfam | PF01657 | Salt stress response/antifungal | 159 | 248 | 7.5E-10 | IPR002902 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 331 | 641 | 5.93E-82 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 307 | 422 | 3.2E-36 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 24 | 131 | 4.4E-12 | IPR038408 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 423 | 619 | 6.2E-59 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 152 | 251 | 2.4E-19 | IPR038408 |
| SMART | SM00220 | serkin_6 | 347 | 613 | 7.4E-38 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 144 | 251 | 15.990985 | IPR002902 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 347 | 618 | 39.608429 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 23 | 132 | 13.519761 | IPR002902 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 468 | 480 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 353 | 375 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04570.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 40. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_006396687.1 | cysteine-rich receptor-like protein kinase 40 isoform X2 [Eutrema salsugineum] | 0 |
| Q9SYS3 | Cysteine-rich receptor-like protein kinase 40 OS=Arabidopsis thaliana OX=3702 GN=CRK40 PE=2 SV=1 | 0 | |
| TrEMBL | V4KJV5 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10028504mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 3 | AT4G04500.1, AT4G04540.1, AT4G04570.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10028430m.g.v1.0, Thhalv10028504m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp6g04360.v2.2, Sp6g04390.v2.2, SpUn0392_0010.v2.2 |
| Brassicaceae | Brassica nigra | 15 | BniB04g010550.2N, BniB05g056170.2N, BniB08g026560.2N ... |