Basic Information
Locus ID:
Thhalv10028498m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Cysteine-rich receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_3 | 2413408 | 2416280 | - | Thhalv10028498m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.66 | 73,907.00 Da | 42.52 | 91.45 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 348 | 609 | 5.49245E-92 | - |
| Pfam | PF01657 | Salt stress response/antifungal | 150 | 243 | 3.2E-9 | IPR002902 |
| Pfam | PF01657 | Salt stress response/antifungal | 31 | 122 | 1.4E-10 | IPR002902 |
| Pfam | PF00069 | Protein kinase domain | 343 | 542 | 6.0E-46 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 326 | 609 | 3.78E-80 | IPR011009 |
| Gene3D | G3DSA:3.30.430.20 | - | 142 | 246 | 6.4E-18 | IPR038408 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 418 | 615 | 3.4E-55 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 302 | 417 | 6.0E-38 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 24 | 125 | 1.5E-13 | IPR038408 |
| SMART | SM00220 | serkin_6 | 342 | 609 | 5.1E-37 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 139 | 246 | 16.05435 | IPR002902 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 21 | 126 | 14.443075 | IPR002902 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 342 | 614 | 38.859325 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 463 | 475 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 348 | 370 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04510.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 38. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_006396683.2 | uncharacterized protein LOC18014392 [Eutrema salsugineum] | 0 |
| Q9XEC8 | Cysteine-rich receptor-like protein kinase 38 OS=Arabidopsis thaliana OX=3702 GN=CRK38 PE=3 SV=1 | 0 | |
| TrEMBL | V4MZQ8 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10028498mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G04490.1, AT4G04510.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028498m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g04370.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB08g038020.2N, BniB08g038050.2N |