Basic Information
Locus ID:
Thhalv10028484m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Legume lectin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_3 | 2118803 | 2120959 | - | Thhalv10028484m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.40 | 76,996.42 Da | 33.79 | 94.00 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06899 | lectin_legume_LecRK_Arcelin_ConA | 23 | 265 | 5.32181E-88 | IPR001220 |
| CDD | cd14066 | STKc_IRAK | 360 | 626 | 7.15628E-88 | - |
| Pfam | PF00139 | Legume lectin domain | 23 | 266 | 2.1E-62 | IPR001220 |
| Pfam | PF00069 | Protein kinase domain | 355 | 622 | 1.9E-48 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 331 | 624 | 1.11E-75 | IPR011009 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 21 | 271 | 3.4E-64 | IPR013320 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 340 | 431 | 1.2E-27 | - |
| Gene3D | G3DSA:2.60.120.200 | - | 21 | 272 | 5.7E-66 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 432 | 639 | 1.5E-57 | - |
| SMART | SM00220 | serkin_6 | 354 | 624 | 3.1E-33 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 354 | 632 | 37.67207 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 360 | 383 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 478 | 490 | - | IPR008271 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04960.1 | Concanavalin A-like lectin protein kinase family protein. | 0 |
| RefSeq | XP_006396646.1 | L-type lectin-domain containing receptor kinase VII.1 [Eutrema salsugineum] | 0 |
| Q9S9U1 | L-type lectin-domain containing receptor kinase VII.1 OS=Arabidopsis thaliana OX=3702 GN=LECRK71 PE=2 SV=1 | 0 | |
| TrEMBL | V4L390 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10028484mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg20289, jg24884 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30019880, pistato.v30072810 |
| Apiaceae | Apium graveolens | 1 | Ag8G00910 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G004160 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720175 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G10401, FtriNA13643 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G04960.1, AT4G28350.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10027026m.g.v1.0, Thhalv10028484m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g03990.v2.2, Sp7g26300.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g011780.2N, BniB08g047280.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G2262, Ceq02G2626 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G2548, Cgl02G2719 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno12g03060, gene.Cymno12g03070 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g07480 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005630 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc09g05560, gene.Posoc09g05580 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.846 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-23763 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1953 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21581 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000027l.60 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20941 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21924 |
| Salicaceae | Populus euphratica | 4 | populus_peu10060, populus_peu18170, populus_peu18171 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132622280, gene-LOC132638654 |
| Solanaceae | Solanum chilense | 1 | SOLCI003823000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009306 |